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toolbox tomlab  (MathWorks Inc)


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    MathWorks Inc toolbox tomlab
    Toolbox Tomlab, supplied by MathWorks Inc, used in various techniques. Bioz Stars score: 96/100, based on 3223 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/tomlab+toolbox/Optimization+Toolbox/pmc03480741-271-4-3
    Average 96 stars, based on 3223 article reviews
    toolbox tomlab - by Bioz Stars, 2026-10
    96/100 stars

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    Article Title: Genome-Scale NAD(H/ + ) Availability Patterns as a Differentiating Feature between Saccharomyces cerevisiae and Scheffersomyces stipitis in Relation to Fermentative Metabolism
    Article Snippet: Implementation of metabolic reconstructions and constrained-based analysis were done using COBRA Toolbox 2.0 with MATLAB 2012a and TomLab/CPLEX v7.8 optimizer.

    Article Title: MOMENT-BASED METHOD FOR RANDOM EFFECTS SELECTION IN LINEAR MIXED MODELS
    Article Snippet: We use the MATLAB toolbox TOMLAB for solving the optimization problem ( Holmström (1999) ).

    Combined Bisulfite Restriction Analysis Assay:

    Article Title: Computational identification of gene over-expression targets for metabolic engineering of taxadiene production
    Article Snippet: Calculations were conducted in MATLAB ® 7.4 (Math-works Inc.; Natick, MA) utilizing the SBMLToolbox (version 2.0.2, http://sbml.org/software/sbmltoolbox/ ) ( Keating et al. 2006 ; Schmidt and Jirstrand 2006 ) and the COBRA Toolbox (version 1.3.3, http://gcrg.ucsd.edu/ ) ( Becker et al. 2007 ). .. Optimization was undertaken using the CPLEX (version 11.0) algorithm of the TOMLAB TM Optimization Environment (TOMLAB TM /CPLEX) interfaced with the COBRA Toolbox and MATLAB ® 7.4. ..

    Article Title: Genome-Scale Methods Converge on Key Mitochondrial Genes for the Survival of Human Cardiomyocytes in Hypoxia
    Article Snippet: .. Linear optimization (flux balance analysis, FBA) was carried out using the Tomlab CPLEX solver (Tomlab Optimization, Miami, FL), implemented from the COBRA toolbox running in Matlab R2012a (MathWorks, Natick, MA), as described in 14. ..

    Article Title: Constraints-based analysis identifies NAD + recycling through metabolic reprogramming in antibiotic resistant Chromobacterium violaceum
    Article Snippet: .. Implementation of the GSMM for C . violaceum and constraints-based analysis was done using Constraints Based Reconstruction and Analysis (COBRA) Toolbox 2.0.2 [ ] with MATLAB v 7.11, (R2010b) and TOMLAB/CPLEX v7.7 optimizer. .. MATLAB codes for all referenced COBRA functions are available at the COBRA’s website ( https://opencobra.github.io/ ).

    Article Title: A scalable metabolite supplementation strategy against antibiotic resistant pathogen Chromobacterium violaceum induced by NAD + /NADH + imbalance.
    Article Snippet: .. Implementation of the central metabolic reconstruction for C. violaceum and constraints-based analysis was done using Constraints Based Reconstruction and Analysis (COBRA) Toolbox 2.0.2 [46] with MATLAB v 7.11, (R2010b) and TOMLAB/CPLEX v7.7 optimizer. .. MATLAB codes for all referenced COBRA functions are available at the COBRA’s website (https://opencobra.github.io/).



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